Package index • phydynR

Functions included in phydynR

DatedTree(): DatedTree function

build.demographic.process(): Build a demographic process model (ODE or SDE)

show.demographic.process(): Show demographic process

colik(): Compute the coalescent log-likelihood.

colik.pik.fgy(): Compute a structured coalescent likelihood given a dated genealogy and a demographic history in FGY format

sim.co.tree(): Simulate a coalescent genealogy based on a demographic process.